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How Does HMRC Calculate Interest On Late Payments?

Written by Simply Accounts | Dec 5, 2025 12:30:00 PM

When a payment deadline is missed, HMRC’s process is immediate and automatic. They don't wait for an inquiry or a formal assessment to start the clock; they begin charging interest right away. This is a critical piece of information for managing your business finances: the interest starts accruing from the day after the deadline.

This charge applies to all late payments, including Income Tax (through Self Assessment), Corporation Tax and VAT, among others. Understanding the formula removes the mystery and allows you to accurately assess the cost of delay.

The Interest Rate Formula

The rate HMRC charges for late payments is not fixed arbitrarily. Instead, it is linked to the Bank of England base rate plus a set percentage. This means the rate is variable and changes when the Bank of England adjusts its base rate.

The formula is designed to achieve two main aims: to compensate the government for the time value of money, and to discourage taxpayers from using HMRC as a cheap source of credit. Because the rate fluctuates with the wider economy, the cost of paying late can change throughout the year, reinforcing the importance of meeting deadlines.

It’s essential to check the official HMRC guidance for the current rate, as they update it shortly after any change in the Bank of England base rate. Knowing where the rate comes from is key to understanding the system.

The Daily Calculation: Compound Interest

How does HMRC calculate interest on late payments day-to-day? The interest is calculated daily until the balance is cleared.

This daily calculation is particularly important because it means the charge can escalate quickly, especially with large tax bills. The interest is applied to the amount of tax that remains unpaid. The longer the delay, the more interest accrues, ensuring the charge is proportional to the delay caused.

For example, a payment due on 31 January that is finally paid on 1 March will incur interest for every day in February, calculated at the official HMRC late payment interest rate. The interest charge is automatic and will appear on your online tax account or on a subsequent statement from HMRC.

Knowing that interest accrues daily is the best incentive to clear your outstanding balance as quickly as possible, either through a lump sum payment or by agreeing to a 'Time to Pay' arrangement with HMRC.

Interest vs. Penalties: A Key Distinction

It’s crucial to understand the difference between interest and penalties, as they serve different purposes and have different tax treatments:

  • Interest compensates for the delay in payment and is charged automatically.
  • Penalties are additional fixed or percentage-based charges imposed for specific compliance failures, such as filing a return late, not notifying HMRC of a new tax liability or making a careless error.

Is HMRC Late Payment Interest Tax Deductible?

A question we frequently receive is: is HMRC late payment interest tax deductible? The answer depends on your business structure and the type of tax involved.

  • Corporation Tax (Limited Companies): Interest paid on overdue Corporation Tax is generally treated as an allowable expense. This means that a limited company can include this interest charge in its accounts to reduce its taxable profit.
  • Income Tax (Sole Traders and Individuals): Interest charged on late Income Tax and Capital Gains Tax is not tax deductible. This is treated as a charge on personal tax rather than a business expense incurred ‘wholly and exclusively’ for the purpose of trade.

This difference highlights why expert, customised advice is so important. You always need to ensure you claim what is legitimately allowable, while fully understanding where a charge is simply a non-deductible cost.

Why Timelines Matters

The entire structure of HMRC late payment interest is designed to encourage timely payments and ensure the smooth running of public finances. For you, the business owner, it means two things:

  • Control: Paying on time means you retain full control over your cash flow and avoid an unnecessary, escalating cost.
  • Peace of Mind: You free yourself from the worry of accruing interest and potential additional penalties.

Next Steps

At Simply Accounts, we treat our clients as people who matter. We want to help you avoid this charge entirely. Our job is to support your financial planning to ensure all your deadlines are met, providing reassurance that we're here to reduce stress and help you manage your accounts effectively. Early planning and proactive communication are always the best defence against the complexity of HMRC interest charges. Please get in touch with our team today and find out more about how we can help you with all your income tax payments and queries.

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